Index

_

__init__() (holonic.client.HolonicDataset method) (holonic.HolonicDataset method), [1]

A

AbstractHolonicStore (class in holonic), [1] (class in holonic.backends) (class in holonic.backends.protocol) (class in holonic.backends.store), [1] activity_iri (holonic.model.TraversalRecord attribute) (holonic.model.ValidationRecord attribute) (holonic.TraversalRecord attribute), [1] (holonic.ValidationRecord attribute), [1] add_boundary() (holonic.client.HolonicDataset method) (holonic.HolonicDataset method), [1] add_construct() (holonic.ProjectionPipeline method), [1] (holonic.projections.ProjectionPipeline method), [1] add_context() (holonic.client.HolonicDataset method) (holonic.HolonicDataset method), [1] add_holon() (holonic.client.HolonicDataset method) (holonic.HolonicDataset method), [1] add_interior() (holonic.client.HolonicDataset method) (holonic.HolonicDataset method), [1] add_portal() (holonic.client.HolonicDataset method) (holonic.HolonicDataset method), [1] add_projection() (holonic.client.HolonicDataset method) (holonic.HolonicDataset method), [1] add_transform() (holonic.ProjectionPipeline method), [1] (holonic.projections.ProjectionPipeline method), [1] agent_iri (holonic.model.TraversalRecord attribute) (holonic.model.ValidationRecord attribute) (holonic.TraversalRecord attribute), [1] (holonic.ValidationRecord attribute), [1] apply() (holonic.ProjectionPipeline method), [1] (holonic.projections.ProjectionPipeline method), [1] (holonic.projections.ProjectionStep method) (holonic.ProjectionStep method), [1]

apply_pipeline() (holonic.client.HolonicDataset method) (holonic.HolonicDataset method), [1] apply_to_graph() (holonic.ProjectionPipeline method), [1] (holonic.projections.ProjectionPipeline method), [1] apply_to_lpg() (holonic.ProjectionPipeline method), [1] (holonic.projections.ProjectionPipeline method), [1] ask() (holonic.AbstractHolonicStore method), [1] (holonic.backends.AbstractHolonicStore method) (holonic.backends.fuseki_backend.FusekiBackend method), [1] (holonic.backends.HolonicStore method) (holonic.backends.protocol.AbstractHolonicStore method) (holonic.backends.protocol.HolonicStore method) (holonic.backends.rdflib_backend.RdflibBackend method), [1] (holonic.backends.RdflibBackend method) (holonic.backends.store.AbstractHolonicStore method), [1] (holonic.backends.store.HolonicStore method), [1] (holonic.HolonicStore method), [1] (holonic.RdflibBackend method) ask_template (holonic.CustomSPARQL attribute), [1] (holonic.scope.CustomSPARQL attribute) attach_pipeline() (holonic.client.HolonicDataset method) (holonic.HolonicDataset method), [1] attributes (holonic.ProjectedEdge attribute), [1] (holonic.ProjectedNode attribute), [1] (holonic.projections.ProjectedEdge attribute), [1] (holonic.projections.ProjectedNode attribute), [1] audit (holonic.viz.provenance.ProvenanceViz property) (holonic.viz.ProvenanceViz property) audit_trail_to_yfiles() (in module holonic.viz) (in module holonic.viz.provenance) AuditTrail (class in holonic), [1] (class in holonic.model)

B

boundary_graphs (holonic.console_model.HolonDetail attribute) (holonic.HolonDetail attribute), [1] (holonic.HolonInfo attribute), [1] (holonic.model.HolonInfo attribute)

build_construct() (in module holonic) (in module holonic.projections), [1]

C

children (holonic.model.HolarchyTree attribute) class_inventory (holonic.console_model.GraphMetadata attribute) (holonic.GraphMetadata attribute), [1] class_iri (holonic.ClassInstanceCount attribute), [1] (holonic.console_model.ClassInstanceCount attribute) (holonic.HasClassInInterior attribute), [1] (holonic.scope.HasClassInInterior attribute) classification (holonic.console_model.HolonDetail attribute) (holonic.console_model.HolonSummary attribute) (holonic.HolonDetail attribute), [1] (holonic.HolonSummary attribute), [1] classify_edge() (in module holonic.viz.styles) ClassInstanceCount (class in holonic), [1] (class in holonic.console_model) collapse_reification() (in module holonic) (in module holonic.projections), [1] collect_audit_trail() (holonic.client.HolonicDataset method) (holonic.HolonicDataset method), [1] color_for_layer() (in module holonic.viz.styles) color_for_layer_light() (in module holonic.viz.styles) COMPROMISED (holonic.MembraneHealth attribute), [1] (holonic.model.MembraneHealth attribute) compute_depth() (holonic.client.HolonicDataset method) (holonic.HolonicDataset method), [1] conforms (holonic.MembraneResult attribute), [1] (holonic.model.MembraneResult attribute) construct (holonic.projections.ProjectionStep attribute) (holonic.ProjectionStep attribute), [1]

construct() (holonic.AbstractHolonicStore method), [1] (holonic.backends.AbstractHolonicStore method) (holonic.backends.fuseki_backend.FusekiBackend method), [1] (holonic.backends.HolonicStore method) (holonic.backends.protocol.AbstractHolonicStore method) (holonic.backends.protocol.HolonicStore method) (holonic.backends.rdflib_backend.RdflibBackend method), [1] (holonic.backends.RdflibBackend method) (holonic.backends.store.AbstractHolonicStore method), [1] (holonic.backends.store.HolonicStore method), [1] (holonic.client.HolonicDataset method) (holonic.HolonicDataset method), [1] (holonic.HolonicStore method), [1] (holonic.RdflibBackend method) construct_query (holonic.console_model.PortalDetail attribute) (holonic.console_model.ProjectionPipelineStep attribute) (holonic.model.PortalInfo attribute) (holonic.PortalDetail attribute), [1] (holonic.PortalInfo attribute), [1] (holonic.ProjectionPipelineStep attribute), [1] context_graphs (holonic.console_model.HolonDetail attribute) (holonic.HolonDetail attribute), [1] (holonic.HolonInfo attribute), [1] (holonic.model.HolonInfo attribute) count (holonic.ClassInstanceCount attribute), [1] (holonic.console_model.ClassInstanceCount attribute) CustomSPARQL (class in holonic), [1] (class in holonic.scope)

D

dataset (holonic.backends.rdflib_backend.RdflibBackend property), [1] (holonic.backends.RdflibBackend property) (holonic.RdflibBackend property) DEFAULT_NAMESPACES (holonic.viz.SPARQLExplorer attribute) (holonic.viz.widgets.SPARQLExplorer attribute) delete_graph() (holonic.AbstractHolonicStore method), [1] (holonic.backends.AbstractHolonicStore method) (holonic.backends.fuseki_backend.FusekiBackend method), [1] (holonic.backends.HolonicStore method) (holonic.backends.protocol.AbstractHolonicStore method) (holonic.backends.protocol.HolonicStore method) (holonic.backends.rdflib_backend.RdflibBackend method), [1] (holonic.backends.RdflibBackend method) (holonic.backends.store.AbstractHolonicStore method), [1] (holonic.backends.store.HolonicStore method), [1] (holonic.HolonicStore method), [1] (holonic.RdflibBackend method)

depth (holonic.console_model.NeighborhoodGraph attribute) (holonic.NeighborhoodGraph attribute), [1] depths (holonic.model.HolarchyTree attribute) derivation_chain (holonic.AuditTrail attribute), [1] (holonic.model.AuditTrail attribute) description (holonic.console_model.ProjectionPipelineSpec attribute) (holonic.console_model.ProjectionPipelineSummary attribute) (holonic.ProjectionPipelineSpec attribute), [1] (holonic.ProjectionPipelineSummary attribute), [1] distance (holonic.ResolveMatch attribute), [1] (holonic.scope.ResolveMatch attribute)

E

edge_color() (in module holonic.viz.styles) edge_type (holonic.console_model.NeighborhoodEdge attribute) (holonic.NeighborhoodEdge attribute), [1] edges (holonic.console_model.NeighborhoodGraph attribute) (holonic.NeighborhoodGraph attribute), [1] (holonic.ProjectedGraph attribute), [1] (holonic.projections.ProjectedGraph attribute), [1] evidence (holonic.ResolveMatch attribute), [1] (holonic.scope.ResolveMatch attribute)

evidence() (holonic.CustomSPARQL method), [1] (holonic.HasClassInInterior method), [1] (holonic.ResolvePredicate method) (holonic.scope.CustomSPARQL method) (holonic.scope.HasClassInInterior method) (holonic.scope.ResolvePredicate method) execute() (holonic.viz.SPARQLExplorer method) (holonic.viz.widgets.SPARQLExplorer method) extract_types() (in module holonic) (in module holonic.projections)

F

filter_by_class() (in module holonic) (in module holonic.projections) find_path() (holonic.client.HolonicDataset method) (holonic.HolonicDataset method), [1] find_portal() (holonic.client.HolonicDataset method) (holonic.HolonicDataset method), [1] find_portals_from() (holonic.client.HolonicDataset method) (holonic.HolonicDataset method), [1] find_portals_to() (holonic.client.HolonicDataset method) (holonic.HolonicDataset method), [1]

format_compartmented() (in module holonic.viz) (in module holonic.viz.formatters) format_shacl_shape() (in module holonic.viz) (in module holonic.viz.formatters) format_simple() (in module holonic.viz) (in module holonic.viz.formatters) format_typed() (in module holonic.viz) (in module holonic.viz.formatters) FusekiBackend (class in holonic.backends.fuseki_backend), [1]

G

get() (holonic.model.HolarchyTree method) get_graph() (holonic.AbstractHolonicStore method), [1] (holonic.backends.AbstractHolonicStore method) (holonic.backends.fuseki_backend.FusekiBackend method), [1] (holonic.backends.HolonicStore method) (holonic.backends.protocol.AbstractHolonicStore method) (holonic.backends.protocol.HolonicStore method) (holonic.backends.rdflib_backend.RdflibBackend method), [1] (holonic.backends.RdflibBackend method) (holonic.backends.store.AbstractHolonicStore method), [1] (holonic.backends.store.HolonicStore method), [1] (holonic.HolonicStore method), [1] (holonic.RdflibBackend method) get_graph_metadata() (holonic.client.HolonicDataset method) (holonic.HolonicDataset method), [1] get_holon() (holonic.client.HolonicDataset method) (holonic.HolonicDataset method), [1] get_holon_detail() (holonic.client.HolonicDataset method) (holonic.HolonicDataset method), [1] get_pipeline() (holonic.client.HolonicDataset method) (holonic.HolonicDataset method), [1]

get_portal() (holonic.client.HolonicDataset method) (holonic.HolonicDataset method), [1] get_registered_transforms() (in module holonic), [1] (in module holonic.plugins) graph_exists() (holonic.AbstractHolonicStore method), [1] (holonic.backends.AbstractHolonicStore method) (holonic.backends.fuseki_backend.FusekiBackend method), [1] (holonic.backends.HolonicStore method) (holonic.backends.protocol.AbstractHolonicStore method) (holonic.backends.protocol.HolonicStore method) (holonic.backends.rdflib_backend.RdflibBackend method), [1] (holonic.backends.RdflibBackend method) (holonic.backends.store.AbstractHolonicStore method), [1] (holonic.backends.store.HolonicStore method), [1] (holonic.HolonicStore method), [1] (holonic.RdflibBackend method) graph_iri (holonic.console_model.PortalDetail attribute) (holonic.PortalDetail attribute), [1] graph_role (holonic.console_model.GraphMetadata attribute) (holonic.GraphMetadata attribute), [1] GraphMetadata (class in holonic), [1] (class in holonic.console_model)

H

HasClassInInterior (class in holonic), [1] (class in holonic.scope) health (holonic.console_model.HolonDetail attribute) (holonic.console_model.HolonSummary attribute) (holonic.console_model.NeighborhoodEdge attribute) (holonic.console_model.NeighborhoodNode attribute) (holonic.console_model.PortalSummary attribute) (holonic.HolonDetail attribute), [1] (holonic.HolonSummary attribute), [1] (holonic.MembraneResult attribute), [1] (holonic.model.MembraneResult attribute) (holonic.model.ValidationRecord attribute) (holonic.NeighborhoodEdge attribute), [1] (holonic.NeighborhoodNode attribute), [1] (holonic.PortalSummary attribute), [1] (holonic.ValidationRecord attribute), [1] health_label (holonic.model.ValidationRecord property) (holonic.ValidationRecord property), [1] holarchy_to_yfiles() (in module holonic.viz) (in module holonic.viz.graph_builder) HolarchyTree (class in holonic.model) HolarchyViz (class in holonic.viz) (class in holonic.viz.widgets) holon_interior_classes() (holonic.client.HolonicDataset method) (holonic.HolonicDataset method), [1] holon_iri (holonic.MembraneResult attribute), [1] (holonic.model.MembraneResult attribute) (holonic.model.SurfaceReport attribute) (holonic.model.ValidationRecord attribute) (holonic.SurfaceReport attribute), [1] (holonic.ValidationRecord attribute), [1] holon_label (holonic.model.ValidationRecord property) (holonic.ValidationRecord property), [1] holon_last_modified (holonic.console_model.HolonDetail attribute) (holonic.HolonDetail attribute), [1] holon_neighborhood() (holonic.client.HolonicDataset method) (holonic.HolonicDataset method), [1] holon_to_yfiles() (in module holonic.viz) (in module holonic.viz.graph_builder) HolonDetail (class in holonic), [1] (class in holonic.console_model) holonic module holonic.backends module holonic.backends.fuseki_backend module holonic.backends.protocol module

holonic.backends.rdflib_backend module holonic.backends.store module holonic.cli module holonic.cli.migrate_registry module holonic.client module holonic.console_model module holonic.model module holonic.ontology module holonic.plugins module holonic.projections module holonic.scope module holonic.sparql module holonic.viz module holonic.viz.formatters module holonic.viz.graph_builder module holonic.viz.provenance module holonic.viz.styles module holonic.viz.widgets module HolonicDataset (class in holonic), [1] (class in holonic.client) HolonicStore (class in holonic), [1] (class in holonic.backends) (class in holonic.backends.protocol) (class in holonic.backends.store), [1] HolonInfo (class in holonic), [1] (class in holonic.model) HolonSummary (class in holonic), [1] (class in holonic.console_model) HolonViz (class in holonic.viz) (class in holonic.viz.widgets) host_metadata() (in module holonic.plugins)

I

INTACT (holonic.MembraneHealth attribute), [1] (holonic.model.MembraneHealth attribute) interior_graphs (holonic.console_model.HolonDetail attribute) (holonic.HolonDetail attribute), [1] (holonic.HolonInfo attribute), [1] (holonic.model.HolonInfo attribute) interior_triple_count (holonic.console_model.HolonDetail attribute) (holonic.console_model.HolonSummary attribute) (holonic.HolonDetail attribute), [1] (holonic.HolonSummary attribute), [1] iri (holonic.console_model.GraphMetadata attribute) (holonic.console_model.HolonDetail attribute) (holonic.console_model.HolonSummary attribute) (holonic.console_model.PortalDetail attribute) (holonic.console_model.PortalSummary attribute) (holonic.console_model.ProjectionPipelineSpec attribute) (holonic.console_model.ProjectionPipelineSummary attribute) (holonic.GraphMetadata attribute), [1] (holonic.HolonDetail attribute), [1] (holonic.HolonInfo attribute), [1] (holonic.HolonSummary attribute), [1] (holonic.model.HolonInfo attribute) (holonic.model.PortalInfo attribute) (holonic.PortalDetail attribute), [1] (holonic.PortalInfo attribute), [1] (holonic.PortalSummary attribute), [1] (holonic.ProjectedNode attribute), [1] (holonic.ProjectionPipelineSpec attribute), [1] (holonic.ProjectionPipelineSummary attribute), [1] (holonic.projections.ProjectedNode attribute), [1] (holonic.ResolveMatch attribute), [1] (holonic.scope.ResolveMatch attribute)

items() (holonic.model.HolarchyTree method)

K

key (holonic.console_model.NeighborhoodEdge attribute) (holonic.console_model.NeighborhoodNode attribute) (holonic.NeighborhoodEdge attribute), [1] (holonic.NeighborhoodNode attribute), [1] kind (holonic.console_model.HolonDetail attribute) (holonic.console_model.HolonSummary attribute) (holonic.console_model.NeighborhoodNode attribute) (holonic.HolonDetail attribute), [1] (holonic.HolonSummary attribute), [1] (holonic.NeighborhoodNode attribute), [1]

L

label (holonic.console_model.HolonDetail attribute) (holonic.console_model.HolonSummary attribute) (holonic.console_model.NeighborhoodEdge attribute) (holonic.console_model.NeighborhoodNode attribute) (holonic.console_model.PortalDetail attribute) (holonic.console_model.PortalSummary attribute) (holonic.HolonDetail attribute), [1] (holonic.HolonInfo attribute), [1] (holonic.HolonSummary attribute), [1] (holonic.model.HolonInfo attribute) (holonic.model.PortalInfo attribute) (holonic.NeighborhoodEdge attribute), [1] (holonic.NeighborhoodNode attribute), [1] (holonic.PortalDetail attribute), [1] (holonic.PortalInfo attribute), [1] (holonic.PortalSummary attribute), [1] (holonic.ProjectedNode attribute), [1] (holonic.projections.ProjectedNode attribute), [1] labels (holonic.model.HolarchyTree attribute) last_modified (holonic.console_model.GraphMetadata attribute) (holonic.GraphMetadata attribute), [1] last_traversal (holonic.console_model.PortalSummary attribute) (holonic.PortalSummary attribute), [1]

layer_metadata (holonic.console_model.HolonDetail attribute) (holonic.HolonDetail attribute), [1] list_holons() (holonic.client.HolonicDataset method) (holonic.HolonicDataset method), [1] list_holons_summary() (holonic.client.HolonicDataset method) (holonic.HolonicDataset method), [1] list_named_graphs() (holonic.AbstractHolonicStore method), [1] (holonic.backends.AbstractHolonicStore method) (holonic.backends.fuseki_backend.FusekiBackend method), [1] (holonic.backends.HolonicStore method) (holonic.backends.protocol.AbstractHolonicStore method) (holonic.backends.protocol.HolonicStore method) (holonic.backends.rdflib_backend.RdflibBackend method), [1] (holonic.backends.RdflibBackend method) (holonic.backends.store.AbstractHolonicStore method), [1] (holonic.backends.store.HolonicStore method), [1] (holonic.HolonicStore method), [1] (holonic.RdflibBackend method) list_pipelines() (holonic.client.HolonicDataset method) (holonic.HolonicDataset method), [1] list_portals() (holonic.client.HolonicDataset method) (holonic.HolonicDataset method), [1] localize_predicates() (in module holonic) (in module holonic.projections)

M

main() (in module holonic.cli.migrate_registry) matches() (holonic.CustomSPARQL method), [1] (holonic.HasClassInInterior method), [1] (holonic.ResolvePredicate method) (holonic.scope.CustomSPARQL method) (holonic.scope.HasClassInInterior method) (holonic.scope.ResolvePredicate method) materialize_rdfs() (holonic.client.HolonicDataset method) (holonic.HolonicDataset method), [1] member_of (holonic.console_model.HolonDetail attribute) (holonic.console_model.HolonSummary attribute) (holonic.HolonDetail attribute), [1] (holonic.HolonSummary attribute), [1] MembraneBreachError, [1] (class in holonic) MembraneHealth (class in holonic), [1] (class in holonic.model) MembraneResult (class in holonic), [1] (class in holonic.model) module holonic holonic.backends holonic.backends.fuseki_backend holonic.backends.protocol holonic.backends.rdflib_backend holonic.backends.store holonic.cli holonic.cli.migrate_registry holonic.client holonic.console_model holonic.model holonic.ontology holonic.plugins holonic.projections holonic.scope holonic.sparql holonic.viz holonic.viz.formatters holonic.viz.graph_builder holonic.viz.provenance holonic.viz.styles holonic.viz.widgets

N

name (holonic.console_model.ProjectionPipelineSpec attribute) (holonic.console_model.ProjectionPipelineStep attribute) (holonic.console_model.ProjectionPipelineSummary attribute) (holonic.ProjectionPipelineSpec attribute), [1] (holonic.ProjectionPipelineStep attribute), [1] (holonic.ProjectionPipelineSummary attribute), [1] (holonic.projections.ProjectionStep attribute) (holonic.ProjectionStep attribute), [1] NeighborhoodEdge (class in holonic), [1] (class in holonic.console_model)

NeighborhoodGraph (class in holonic), [1] (class in holonic.console_model) NeighborhoodNode (class in holonic), [1] (class in holonic.console_model) node_type (holonic.console_model.NeighborhoodNode attribute) (holonic.NeighborhoodNode attribute), [1] nodes (holonic.console_model.NeighborhoodGraph attribute) (holonic.NeighborhoodGraph attribute), [1] (holonic.ProjectedGraph attribute), [1] (holonic.projections.ProjectedGraph attribute), [1]

O

optional_fields (holonic.model.SurfaceReport attribute) (holonic.SurfaceReport attribute), [1]

P

parents (holonic.model.HolarchyTree attribute) parse_into() (holonic.AbstractHolonicStore method), [1] (holonic.backends.AbstractHolonicStore method) (holonic.backends.fuseki_backend.FusekiBackend method), [1] (holonic.backends.HolonicStore method) (holonic.backends.protocol.AbstractHolonicStore method) (holonic.backends.protocol.HolonicStore method) (holonic.backends.rdflib_backend.RdflibBackend method), [1] (holonic.backends.RdflibBackend method) (holonic.backends.store.AbstractHolonicStore method), [1] (holonic.backends.store.HolonicStore method), [1] (holonic.HolonicStore method), [1] (holonic.RdflibBackend method) participating_holons (holonic.AuditTrail property), [1] (holonic.model.AuditTrail property) portal_label (holonic.model.TraversalRecord attribute) (holonic.TraversalRecord attribute), [1] portal_traversal_history() (holonic.client.HolonicDataset method) (holonic.HolonicDataset method), [1] PortalDetail (class in holonic), [1] (class in holonic.console_model) PortalInfo (class in holonic), [1] (class in holonic.model) PortalSummary (class in holonic), [1] (class in holonic.console_model) post_graph() (holonic.AbstractHolonicStore method), [1] (holonic.backends.AbstractHolonicStore method) (holonic.backends.fuseki_backend.FusekiBackend method), [1] (holonic.backends.HolonicStore method) (holonic.backends.protocol.AbstractHolonicStore method) (holonic.backends.protocol.HolonicStore method) (holonic.backends.rdflib_backend.RdflibBackend method), [1] (holonic.backends.RdflibBackend method) (holonic.backends.store.AbstractHolonicStore method), [1] (holonic.backends.store.HolonicStore method), [1] (holonic.HolonicStore method), [1] (holonic.RdflibBackend method) predicate (holonic.ProjectedEdge attribute), [1] (holonic.projections.ProjectedEdge attribute), [1] print_report() (holonic.viz.provenance.ProvenanceViz method) (holonic.viz.ProvenanceViz method) project_holarchy() (holonic.client.HolonicDataset method) (holonic.HolonicDataset method), [1]

project_holon() (holonic.client.HolonicDataset method) (holonic.HolonicDataset method), [1] project_to_lpg() (in module holonic) (in module holonic.projections), [1] projected_to_yfiles() (in module holonic.viz) (in module holonic.viz.graph_builder) ProjectedEdge (class in holonic), [1] (class in holonic.projections), [1] ProjectedGraph (class in holonic), [1] (class in holonic.projections), [1] ProjectedNode (class in holonic), [1] (class in holonic.projections), [1] projection_graphs (holonic.console_model.HolonDetail attribute) (holonic.HolonDetail attribute), [1] (holonic.HolonInfo attribute), [1] (holonic.model.HolonInfo attribute) projection_transform() (in module holonic), [1] (in module holonic.plugins) ProjectionPipeline (class in holonic), [1] (class in holonic.projections), [1] ProjectionPipelineSpec (class in holonic), [1] (class in holonic.console_model) ProjectionPipelineStep (class in holonic), [1] (class in holonic.console_model) ProjectionPipelineSummary (class in holonic), [1] (class in holonic.console_model) ProjectionStep (class in holonic), [1] (class in holonic.projections) ProvenanceViz (class in holonic.viz) (class in holonic.viz.provenance) put_graph() (holonic.AbstractHolonicStore method), [1] (holonic.backends.AbstractHolonicStore method) (holonic.backends.fuseki_backend.FusekiBackend method), [1] (holonic.backends.HolonicStore method) (holonic.backends.protocol.AbstractHolonicStore method) (holonic.backends.protocol.HolonicStore method) (holonic.backends.rdflib_backend.RdflibBackend method), [1] (holonic.backends.RdflibBackend method) (holonic.backends.store.AbstractHolonicStore method), [1] (holonic.backends.store.HolonicStore method), [1] (holonic.HolonicStore method), [1] (holonic.RdflibBackend method)

Q

query() (holonic.AbstractHolonicStore method), [1] (holonic.backends.AbstractHolonicStore method) (holonic.backends.fuseki_backend.FusekiBackend method), [1] (holonic.backends.HolonicStore method) (holonic.backends.protocol.AbstractHolonicStore method) (holonic.backends.protocol.HolonicStore method) (holonic.backends.rdflib_backend.RdflibBackend method), [1] (holonic.backends.RdflibBackend method) (holonic.backends.store.AbstractHolonicStore method), [1] (holonic.backends.store.HolonicStore method), [1] (holonic.client.HolonicDataset method) (holonic.HolonicDataset method), [1] (holonic.HolonicStore method), [1] (holonic.RdflibBackend method)

R

RdflibBackend (class in holonic) (class in holonic.backends) (class in holonic.backends.rdflib_backend), [1] record_traversal() (holonic.client.HolonicDataset method) (holonic.HolonicDataset method), [1] record_validation() (holonic.client.HolonicDataset method) (holonic.HolonicDataset method), [1] refresh() (holonic.viz.provenance.ProvenanceViz method) (holonic.viz.ProvenanceViz method) refresh_all_metadata() (holonic.client.HolonicDataset method) (holonic.HolonicDataset method), [1] refresh_metadata() (holonic.client.HolonicDataset method) (holonic.HolonicDataset method), [1] refreshed_at (holonic.console_model.GraphMetadata attribute) (holonic.GraphMetadata attribute), [1] register_pipeline() (holonic.client.HolonicDataset method) (holonic.HolonicDataset method), [1] register_pipeline_ttl() (holonic.client.HolonicDataset method) (holonic.HolonicDataset method), [1] registry_graph (holonic.client.HolonicDataset property) (holonic.HolonicDataset property), [1]

remove_holon() (holonic.client.HolonicDataset method) (holonic.HolonicDataset method), [1] remove_portal() (holonic.client.HolonicDataset method) (holonic.HolonicDataset method), [1] report_text (holonic.MembraneResult attribute), [1] (holonic.model.MembraneResult attribute) required_fields (holonic.model.SurfaceReport attribute) (holonic.SurfaceReport attribute), [1] resolve() (holonic.client.HolonicDataset method) (holonic.HolonicDataset method), [1] (holonic.scope.ScopeResolver method) (holonic.ScopeResolver method), [1] resolve_transform() (in module holonic), [1] (in module holonic.plugins) ResolveMatch (class in holonic), [1] (class in holonic.scope) ResolveOrder (in module holonic.scope) ResolvePredicate (class in holonic) (class in holonic.scope) roots (holonic.model.HolarchyTree property) run_projection() (holonic.client.HolonicDataset method) (holonic.HolonicDataset method), [1]

S

ScopeResolver (class in holonic), [1] (class in holonic.scope) shape_for_layer() (in module holonic.viz.styles) shorten_uri() (in module holonic.viz.styles) show() (holonic.viz.HolarchyViz method) (holonic.viz.HolonViz method) (holonic.viz.provenance.ProvenanceViz method) (holonic.viz.ProvenanceViz method) (holonic.viz.SPARQLExplorer method) (holonic.viz.widgets.HolarchyViz method) (holonic.viz.widgets.HolonViz method) (holonic.viz.widgets.SPARQLExplorer method) show_with_controls() (holonic.viz.HolarchyViz method) (holonic.viz.HolonViz method) (holonic.viz.provenance.ProvenanceViz method) (holonic.viz.ProvenanceViz method) (holonic.viz.widgets.HolarchyViz method) (holonic.viz.widgets.HolonViz method) size (holonic.console_model.NeighborhoodEdge attribute) (holonic.console_model.NeighborhoodNode attribute) (holonic.NeighborhoodEdge attribute), [1] (holonic.NeighborhoodNode attribute), [1] source (holonic.console_model.NeighborhoodEdge attribute) (holonic.NeighborhoodEdge attribute), [1] (holonic.ProjectedEdge attribute), [1] (holonic.projections.ProjectedEdge attribute), [1] source_holon (holonic.console_model.NeighborhoodGraph attribute) (holonic.NeighborhoodGraph attribute), [1] source_iri (holonic.console_model.PortalDetail attribute) (holonic.console_model.PortalSummary attribute) (holonic.model.PortalInfo attribute) (holonic.model.TraversalRecord attribute) (holonic.PortalDetail attribute), [1] (holonic.PortalInfo attribute), [1] (holonic.PortalSummary attribute), [1] (holonic.TraversalRecord attribute), [1]

source_label (holonic.model.TraversalRecord property) (holonic.TraversalRecord property), [1] sparql_result_to_yfiles() (in module holonic.viz) (in module holonic.viz.graph_builder) SPARQLExplorer (class in holonic.viz) (class in holonic.viz.widgets) step_count (holonic.console_model.ProjectionPipelineSummary attribute) (holonic.ProjectionPipelineSummary attribute), [1] steps (holonic.console_model.ProjectionPipelineSpec attribute) (holonic.ProjectionPipeline attribute), [1] (holonic.ProjectionPipelineSpec attribute), [1] (holonic.projections.ProjectionPipeline attribute), [1] strip_blank_nodes() (in module holonic) (in module holonic.projections) summary() (holonic.AuditTrail method), [1] (holonic.client.HolonicDataset method) (holonic.HolonicDataset method), [1] (holonic.MembraneResult method), [1] (holonic.model.AuditTrail method) (holonic.model.MembraneResult method) SurfaceReport (class in holonic), [1] (class in holonic.model) surfaces (holonic.AuditTrail attribute), [1] (holonic.model.AuditTrail attribute)

T

target (holonic.console_model.NeighborhoodEdge attribute) (holonic.NeighborhoodEdge attribute), [1] (holonic.ProjectedEdge attribute), [1] (holonic.projections.ProjectedEdge attribute), [1] target_classes (holonic.model.SurfaceReport attribute) (holonic.SurfaceReport attribute), [1] target_iri (holonic.console_model.PortalDetail attribute) (holonic.console_model.PortalSummary attribute) (holonic.model.PortalInfo attribute) (holonic.model.TraversalRecord attribute) (holonic.PortalDetail attribute), [1] (holonic.PortalInfo attribute), [1] (holonic.PortalSummary attribute), [1] (holonic.TraversalRecord attribute), [1] target_label (holonic.model.TraversalRecord property) (holonic.TraversalRecord property), [1] timestamp (holonic.model.TraversalRecord attribute) (holonic.model.ValidationRecord attribute) (holonic.TraversalRecord attribute), [1] (holonic.ValidationRecord attribute), [1] to_dict() (holonic.ProjectedGraph method), [1] (holonic.projections.ProjectedGraph method), [1]

to_graphology() (holonic.console_model.NeighborhoodGraph method) (holonic.NeighborhoodGraph method), [1] transform (holonic.projections.ProjectionStep attribute) (holonic.ProjectionStep attribute), [1] transform_name (holonic.console_model.ProjectionPipelineStep attribute) (holonic.ProjectionPipelineStep attribute), [1] transform_version() (in module holonic.plugins) TransformNotFoundError, [1] (class in holonic) TraversalRecord (class in holonic), [1] (class in holonic.model) traversals (holonic.AuditTrail attribute), [1] (holonic.model.AuditTrail attribute) traverse() (holonic.client.HolonicDataset method) (holonic.HolonicDataset method), [1] traverse_portal() (holonic.client.HolonicDataset method) (holonic.HolonicDataset method), [1] triple_count (holonic.console_model.GraphMetadata attribute) (holonic.GraphMetadata attribute), [1] triples (holonic.console_model.NeighborhoodNode attribute) (holonic.NeighborhoodNode attribute), [1] types (holonic.ProjectedNode attribute), [1] (holonic.projections.ProjectedNode attribute), [1]

U

update() (holonic.AbstractHolonicStore method), [1] (holonic.backends.AbstractHolonicStore method) (holonic.backends.fuseki_backend.FusekiBackend method), [1] (holonic.backends.HolonicStore method) (holonic.backends.protocol.AbstractHolonicStore method) (holonic.backends.protocol.HolonicStore method) (holonic.backends.rdflib_backend.RdflibBackend method), [1] (holonic.backends.RdflibBackend method) (holonic.backends.store.AbstractHolonicStore method), [1] (holonic.backends.store.HolonicStore method), [1] (holonic.client.HolonicDataset method) (holonic.HolonicDataset method), [1] (holonic.HolonicStore method), [1] (holonic.RdflibBackend method)

V

validate_membrane() (holonic.client.HolonicDataset method) (holonic.HolonicDataset method), [1] validation_for() (holonic.AuditTrail method), [1] (holonic.model.AuditTrail method) ValidationRecord (class in holonic), [1] (class in holonic.model) validations (holonic.AuditTrail attribute), [1] (holonic.model.AuditTrail attribute)

violations (holonic.MembraneResult attribute), [1] (holonic.model.MembraneResult attribute) (holonic.model.SurfaceReport attribute) (holonic.SurfaceReport attribute), [1] visualize_result() (holonic.viz.SPARQLExplorer method) (holonic.viz.widgets.SPARQLExplorer method)

W

warnings (holonic.MembraneResult attribute), [1] (holonic.model.MembraneResult attribute) (holonic.model.SurfaceReport attribute) (holonic.SurfaceReport attribute), [1]

WEAKENED (holonic.MembraneHealth attribute), [1] (holonic.model.MembraneHealth attribute)